Sunday, July 7, 2024

Why don’t humans have tails? Scientists find answers in an unlikely place

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About 25 million years ago, a change happened to put humans on an evolutionary path different from monkeys. The group of animals called Old World monkeys had tails, but a new group did not. That group later became gorillas, chimpanzees, baboons, orangutans, and humans. None of them have tails. But we have tailbones, so why not tails? How and why did this happen?

Evolutionary chart of Old and New World monkeys and the apes (Nature, 2024)
Ma = million years ago

Monkeys can be divided into two groups depending on where (and when) they originated. Old World monkeys came from Europe, Africa, and Asia, which were the older parts of the world that were known to the Europeans at the time. After they set out to explore, they discovered places like North and South America, known as the New World. So, New World monkeys came from there. What is confusing is that on the evolutionary calendar, New World monkeys are older; they originated about 40 million years ago as a splitting off from other primates of the time. Old World monkeys spun off the New World monkeys about 25 million years ago. The majority of both types of monkeys had tails, and they are called the non-hominoids.

New World monkeys (left) and Old World Monkeys (right)

Hominoids grew out of the Old World monkeys. They include what are now called the Great Apes (humans, chimpanzees, gorillas, and orangutans) and the Lesser Apes (gibbons). The hominoids are different from the non-hominoids in having the following characteristics:

  • generally larger brains relative to body size compared to other primates
  • more flexible shoulder joints
  • increased reliance on vision than smell
  • longer gestation and maturation periods
  • no tails
Great apes (adapted from Brittanica)

Tails themselves can be divided into two categories for primates: prehensile and non-prehensile. Prehensile tails can be used for grasping objects (fruits, branches), while non-prehensile tails can't. Generally, Old World monkey tails are non-prehensile and are used mostly for balance or social signalling (baboons, macaques). Most New World monkey tails are like that, too (marmosets, squirrel monkeys), but some are prehensile (spider monkeys, howler monkeys) and act like an extra hand.

Black  howler monkey with prehensile tail in action. (YouTube)

What about the Great and Lesser Apes?

They have tailbones, called a coccyx, which is comprised of 3-5 fused vertebrae at the end of the spine. They are about 6-9 cm (2.5 to 3.5 inches) long. There doesn't appear to be any examples of intermediate forms of apes with shorter and shorter tails, so the number of vertebrae must have changed suddenly to produce the tailless apes.

Coccyx in humans (left) and comparison to gorillas (right) 

Scientists at the Broad Institute (a collaboration between MIT and Harvard) think they have discovered the genetic cause of tail loss in Great and Lesser Apes.  A team led by researcher Bo Xia examined DNA of 15 species of monkeys with tails and 6 species of tailless apes (including humans). They were looking for a mutation in the human and ape DNA compared to monkeys.

That sounds like a big task because of so much information in DNA. However, the following primates' DNA has been completely sequenced (read to make a list of all the nucleic acids):

  • humans (2003)
  • chimpanzees (2005)
  • rhesus macaques (2007)
  • orangutans (2011)
  • gorillas & bonobos (2012)
  • gibbons & marmosets (2014)

Scientists already know what 60% of human DNA functions are, and that includes mostly useless parasitic genes from viruses. But there is still about 40% that has an unknown function, so until it is learned, that is called "junk DNA". Xia's team didn't find any answers in the DNA with known functions, but the junk DNA provided the clue.

In the code of a gene called TBXT, which is associated with tail length, there was a flaw. A piece of junk. There are short fragments of DNA called Alu elements, that copy themselves like a virus, then jump around and move the copy to a new position in the DNA. Its only function is to do this. Humans have a million Alu elements scattered throughout their DNA, making up half of its content! That probably explains why humans are born with 10-100 mutations (mostly harmless), compared to the <1 mutations in other species.

These "jumping genes" can be mildly or severely troublesome. They can cause breaks in DNA, carry pieces of other DNA with them, disrupt the normal function of a gene if they land in the middle, and increase the mutation rate. They can be as small as a few hundred base pairs long (the nucleic acids on both sides of the DNA double helix) or a few thousand. Human DNA has about 3 billion base pairs.

How an Alu element ("jumping gene") moves in a DNA strand

A specific junk Alu element called AluY was found only in hominoids inside the TBXT gene. Finding this was remarkable enough. But TBXT already had a jumping gene like monkeys with tails do, but it did nothing. Was this extra one AluY somehow the cause of losing a tail? Xia and his team spent 4 years looking at the effects of both jumping genes in mice. They found that when they put the two jumping genes close together, they stick to each other and cause problems when the tail is made. A hole is formed in the TBXT tail protein, and the mouse's tail becomes shorter. The more of the damaged protein that is made causes the tail to become shorter by reducing the number of vertebrae in it.

Mouse tail experiements with 2 Alu elements in the TBXT gene (Nature, 2024)
(cv and sv are different types of vertebrae)

None of this explains why the natural mutation in the TBXT gene was actually successful. Apes including humans began walking upright without the need for a tail to balance on, to signal each other, or to grab onto branches. But, the two oldest hominoid fossils found in Kenya dating to 21 million years ago and 18 million years ago (Proconsul and Afropithecus) show that even by then there were no tails. They lived in trees and walked horizontally. So, just leaving trees did not prompt the jumping gene mutation. And since there are no intermediate hominide fossils showing a shorter and shorter tail, this happened suddenly and persisted for some unknown reason.

Drawing of Proconsul (Wikipedia)

Human embryos 4-6 weeks old have tails about 10-13 vertebrae long, but they almost always disappear by the eighth week. In extremely rare cases, children are born with a tail-like appendage, when the embryonic one is not naturally absorbed during fetal growth. Some have bones, others don't. They are all easily removed.


Whether the loss of a tail meant some evolutionary advantage is still uncertain. But the mutation from the pair of jumping genes in the TBXT DNA has a potential disadvantage that medical researchers might be able to investigate further. Some of the tailless mice in the study developed spinal column defects resembling spina bifida in humans. Spina bifida is a condition that occurs when the backbone doesn't completely form in specific areas, so the spinal column is not protected and will deform. The research on the TBXT gene mutation suggests spina bifida might come from the same mutation that eliminated tails. Medical science now has a stronger handle on its cause and might be closer to a solution.


Proconsul coccyx and explanation of why it appears tailless (4:00)


Monday, July 1, 2024

Rats may have imaginations

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It's bad enough that rats have such a negative image, from spreading diseases to deserting a sinking ship. They are a commonly used laboratory test animal, though. That's largely because their physiology and genetics are similar to that of humans. They've been used in drug testing, disease modeling, psychological studies, environmental chemical exposure testing, neuroscience research, surgery studies, and more. But recent research is showing some signs that rats may not be the docile creatures we picture them in a lab. They may actually have imaginations similar to humans. What this means is that they might be able to think about objects and places that are not directly in front of them. 

From Popular Science article

Two movies from the early 1970s, Willard and Ben, were about an army of rats bonding with a young man for insidious purposes. The highly intelligent rat leader Ben was written with a supernatural element to support his ability to lead.


Once we get to a certain age, humans can envision objects that aren't in front of us; we can create an image of them in our minds. The same goes for places and how to get to them. As for locations, this ability to set them in our minds is part of raw memory coupled to being able to see into a future event (how to go to a place).

The part of our brain that holds this spatial recognition (recognizing space) is called the hippocampus. It is made of 2 curved bodies that look like a seahorse, fatter on one end. They are connected to each other, but it is believed that the right hippocampus deals more with spatial memory and navigation, while the left one is involved more with verbal or language-related memory.
Location of left and right hippocampus (red) in humans (Wikipedia)

The cross-section diagram below shows the location and size of one hippocampus (Hi) in a mouse. Next to it is a dark blue area that feeds it additional information about recognizing what objects are.

Outline of mouse head with light blue brain and hippocampus in center (Boaz Barak)

A team of researchers at the Howard Hughes Medical Institute in Maryland recently set up a series of experiments to test whether rats can use their thoughts to imagine going towards a specific place or to imagine moving an object.

In phase one of the research, they attached electrodes to a rat's hippocampus through a BMI (brain-machine interface). The rat was placed on the top of a blank sphere, but a projector showed images of geometric shapes on a screen around it to give the rat the impression that it was navigating a 1 meter x 1 meter flat field with those shapes on it. There is a water dropper near its mouth, and the rat is rewarded as it moves in the right direction. The BMI records the activity in the rat’s hippocampus, and the researchers can then map it out to see which neurons are activated as the rat moves about.
3D treadmill with projector at the top displaying images on the screen (Howard Hughes Medical Institute)


Samples of what the rat sees (Howard Hughes Medical Institute)

Then, the treadmill is disconnected but the rat is allowed to see the screen image, and the rat must remember and mentally duplicate the recorded images stored in the BMI --- basically, it remembers the pattern of navigation it used to get to the goal the first time. If it's successful, it gets water again. The researchers described the brain signals from the rat brains as a “thought dictionary”.

Phase two of the research is called the "Jedi task". In Star Wars movies, Jedi masters can move objects with their minds. The rat is shown an object on the screen, and through trial and error it learns to imagine directing it to a goal, simulating telekinesis on the screen. The researchers compare this to what we do when we imagine taking a cup next to a coffee machine and filling it. The object is moved, and the rat repeats the digital moving. You can see this from a bird's-eye view of the screen in the video below.
A rat performing a "Jedi mind trick" (Howard Hughes Medical Institute)

As you watch the video, notice how the orange dot represents where the rat imagines the square object should go. It repeatedly puts it there and can hold its thoughts on a given location for many seconds, remarkable considering there is no actual object or physical target location! So much for the short attention span that we think rats have.

Aside from the novelty of this research, it has added information about the hippocampus activity to science. Moreover, the BMI has been used in earlier research on humans and might be improved with this rat data. People may suffer what is called complete locked-in syndrome and be paralyzed suddenly after a stroke or brainstem injury, or slowly as in amyotrophic lateral sclerosis (ALS). They are conscious but unable to move any muscle. Neuroscientist Niels Birbaumer at the Wyss Center for Bio and Neuroengineering in Geneva, Switzerland was able to get such patients to answer yes/no questions in 2017 with a BMI similar to the rat research. Who knows what lies ahead?
Testing the BMI from the Wyss Center (Popular Science)

Similar technology is used to direct the movement of artificial limbs like the Proprio Foot made in Iceland. Most brain-controlled bionic limbs are still only in the lab stage of development right now.
Proprio Foot (Popular Science, 2015)