Wednesday, September 23, 2026

Bio-metals: Ancient sea worms hold the secret to a strange new class of materials

Link to article

Many animals have teeth for cutting, holding, and grinding food before it is swallowed. Humans and fish, for example, have teeth made of the same base material (dentine), but they are covered with slightly different coatings of enamel or enameloid. Rodents like beavers and squirrels have strong front teeth whose enamel contains pockets of iron for strengthy and self-sharpening. Turtles and birds have beaks made of the protein keratin. Crustaceans have a gastric mill apparatus inside the stomach where its teeth and levers (ossicles) do the work. These body parts are made of chitin, much like its exoskeleton, which is a tough carbohydrate material.

European gray wolf and sea bream

Sea worms are a diverse group of worms with body segments like earthworms but which live in sea or fresh water environments. They have many shapes, sizes, and environmental homes.

The Nereis species are generally 5-30 centimeters (2-12 inches) long and about 1 cm (0.4 inches) wide. They are scavengers feeding mostly on small invertebrates or algae. Some of them like the Nereis species burrow into the underwater sand or mud especially near coasts and are classified as bristle worms, clam worms, ragworms, or sandworms. 

Nereis pelagica (Wikipedia)

Mouth parts of the Nereis species of sea worms are held inside the body as it searches for food. Several types of appendages stick out for detection of chemicals and vibrations. 

  • Tentacles (or antennae) probe ahead of the worm with taste and smell receptors on the ends.
  • Cirri are whiskers that sense changes in water pressure, sound, or mechanical pressure in 360 around the head. These are mostly used to detect predators.
  • Muscular projections called palps have taste receptors but also help to hold food.
  • Slits called nuchal organs have concentrated cilia for long-range scent detection.

When they locate food, the inner part of the mouth comes out like the jaws on the extraterrestrial in the movie Alien. There are 2-4 curved jaws that act like pincers to grab and cut food as they draw it back into the mouth opening.

From YouTube

In some sea worms, the jaws are made of a hard protein material that contains zinc, copper, and silver. The zinc is important in its ability to shred and hold food, but it is also intriguing to researchers who have named this complex of protein and metal ions "bio-metals".

Jaws of the Perinereis cultrifera sea worm (From Biophysics Reviews, 2026)

In 2006, researchers at the University of California Santa Barbera made a cross-section near the tip of one of these jaws. They measured the zinc there and found that it was uniformly distributed through the section. When they removed it with chemical treatment, they noticed the jaw had become soft and more flexible.

Images showing the location of the cross-section (red) and how much zinc had been removed 
with chemical treatment (Journal of Experimental Biology, 2006)

Researchers at the Vienna University of Technology have studied this sea worm's jaws. They examined 11 places along the length of the jaw. In the picture below, we see a narrow strip of the jaw. The black circles are near the tip, and the white circles are closer to the base. At each location, they pressed the tip of a nanoindenter instrument, which is used to measure the mechanical properties of materials at the micro- and nanoscale. 

One jaw of the sea worm showing where researchers checked for hardness (Biophysics Reviews, 2026)

  • The researchers put the worm's jaw under the instrument.
  • They positioned the diamond tip at one of the 11 circles.
  • The machine pressed the diamond into the jaw with a very small force.
  • It measured how far the diamond penetrated.
  • From the force and the resulting indentation, they calculated the material's hardness.
  • They made indentations 100–1,000 nanometers deep. A nanometer is one-millionth of a millimeter.

The Vienna University nanoindenter apparatus (TI 900 TriboIndenter brochure)
The diamond tip of the nanoindenter (Synton-MDP)

They weren't testing just once at each circle. They performed hundreds of indentations at each location, at different depths—100, 200, 400, 600, 800, and 1,000 nm. They found that the tip was harder than the middle part of the jaw. The two colors of circle just indicates two ranges of hardness. It actually got harder along the jaw up to the tip where it was hardest. Some of that variation is related to the microscopic structure of the jaw—it's made of fibers, and a tiny indentation can land on a fiber or at the interface between fibers, and that affects the measurement.

Image showing the protein-fiber makeup of the jaw (Vienna University, 2021 paper)

That fibrous matrix look uneven in composition, not smoothly containing the protein. The same researchers found that metal ions were part of the jaw, connected to the protein fibers and lined up in a pattern called the dislocation line. That line affected the strength of the jaw material to allow it to bend more in certain places. Metal bends, but crystals don't. This arrangements of metals in the jaw acted mechanically somewhere in between a metal and a crystal and was named "bio-metal".

Chemical diagram showing how metal ions attached to protein 
at the amino acid histidine (Vienna University 2021 paper)

The researchers also took measurements of which types of metals were in the jaw and where they were. As you can see below, the zinc ions were at the tip, where the hardness was greatest.

Distribution of ions in the sea worm jaw (Vienna University 2021 paper)

In a 2026 paper, Japanese scientists used special elemental analysis to measure how much of certain metal ions were in different locations. Look at the numbers on the y-axis of these graphs, and you can see not just where in the jaw the metals are found, but how much more zinc there is than the other metals. It is concentrated mostly at the tip of the jaw and in a high amount.

Pattern of metals and their amount in the sea worm jaw (Kato et al., 2026)

Vertebrate teeth contain calcium-phosphate to strengthen the teeth. Insects use a polymer called chitin and sometime zinc but in a different arrangement. Some researchers are looking into ways to use the bio-metal material from sea worms because it is not only hard but light. Many industries such as automobiles to aeronautics may want to use results from these experiments to develop new ways to develop hard and lightweight materials. The main functions of the jaws on sea worms are to hold prey, scrape food off surfaces, tunneling, and cut, chew, crack, and crush food. The mechanical properties needed to do those thing might also be adapted to various tools for humans in many fields.


Sunday, August 23, 2026

 

Adriana C. Ocampo: 1955—: Planetary geologist

Image from Wikipedia

Adriana Ocampo was born on January 5, 1955 in Columbia, and the family moved to Argentina before she was one year old. Her father was an electronics technician, teacher, and salesman, and he encouraged her interests in science by buying her a chemistry set and telescope. The dolls she played with were outfitted as astronauts. One of her favorite authors was science fiction writer Jules Verne.

From her birth to the time she entered high school, world events had primed her interest in space exploration. Russia had launched the first man and first woman into space in 1961. The United States had its Mercury and Gemini programs in 1958-1963 and 1961-1966, respectively. Apollo had begun in 1960, and the tragic launchpad fire aboard Apollo 1 (January 27, 1967) didn't stop 3 uncrewed test flights (1967-1968) and 4 crewed flights (1968-1969) by the time she was ready to start high school With the American space program so prevalently in the new, she showed her interest by writing to NASA right around the time of Apollo 11's landing on the Moon. NASA responded with a letter in English, which she couldn't read at the time, and a postage stamp of Neil Armstrong on the Moon, which delighted her to no end. 


She was not like other girls and played mostly with boys. Her girl friends' ambitions were lower (nurse, not a doctor), and they weren't interested in stories about space like boys were. She might have acquired a rebellious nature from her mother, a native Argentine who taught at a Montessori school -- characterized by hands-on activities, and self-directed work instead of traditional lectures and tests. Her junior high school (Colegio Nacional de Vicente Lopez) was painful for her. She disliked the white robe required to go over her clothes, and she refused to follow suit with a long hair style like other girls. Lectures in class bored her.


At home, she learned to fix radios and her uncle's car, and she designed winged space shuttles even though they were 10 years away. Adriana even flew her own paper airplane designs off the roof where she built a 
"space center" that included a launch pad and rocket ship using kitchen utensils and materials from her father's electrical workshop. She even built her own lunar colony model there with domed habitats, a greenhouse, an oxygen lab, and a centipede-shaped moon rover.

Because of the weakening economy in Argentina and its unstable government, Adriana's father left for Los Angeles to find work in September 1968. In letters, she continued her engineering self-education by asking her father technical questions like how to repair the washing machine.

Adriana felt suited for engineering, and a high school aptitude exam showed she was "good at numbers and that her mind was analytical; she could break down a big problem into steps and solve it". However, they placed her in a business school instead of a technical school, perhaps because of stereotypical gender roles back then. In December 1969, the family moved to Los Angeles where her father had a job in an auto factory. Her first question was "Where is NASA?" In high school, she studied English and got special permission to take boys-only classes in woodworking, drafting, and car mechanics.

The Boy Scouts visited her school to describe a special new branch called Space Explorers Post 509, sponsored by NASA's Jet Propulsion Laboratories (JPL). She started attending weekly meetings in 1972, and in 1973, Adriana got a summer job at JPL in Pasadena. There, she toured off-limits areas of JPL and was exposed to robotic spacecraft like Pioneer (first launched in 1958) and Mariner (10 probes launched 1962-1973). 

She worked among men with doctoral degrees on a project called Very Long Baseline Interferometry (VLBI), which used radio telescopes to study space. Regular telescopes collect data through glass lenses, and their resolution is limited to the size of the lens. Radio telescopes work differently by collecting radio waves from objects in space. The VLBI project used the data from several radio telescopes and the distance between them (many miles) to expand resolution as if they were using a glass lens telescope that many miles in diameter.

How VLBI works with only 2 radio telescopes. (from Geodesy)

Based on that experience as a technician, she started university with a major in aerospace engineering.  During her part-time work at JPL in college, she analyzed images sent by the two Viking spacecraft on Mars in 1976. Those images and the possible meanings they held caused her to change her undergraduate major at the California State University to geology (graduated 1983), and then her master's there became planetary geology. Compared to strict schooling in Argentina, California's university lifestyle was wonderful. She wrote: “In geology, you have to do a lot of fieldwork — and it was great that they offered the options to do this over the weekends. The professors tried to allow students that flexibility....I was one of the many students who studied part time and worked full time. I needed to find a university that would allow me the flexibility to do that, to take classes in the afternoons, evenings and weekends. I found that the CSUN Department of Geology was very receptive" (CSUN, vol. 67)

At NASA in the early 1980s, Ocampo was a member of the navigation and mission planning team for Voyager to visit the outer planets. She helped develop the Saturn ephemerides—tables showing the changing positions of Saturn and its satellites—to be used for the Voyager's encounter. She also was a co-investigator on the Hermes mission to explore the planet Mercury.

In 1980, while Adriana was doing her undergraduate work, scientists hypothesized that an asteroid had hit the Earth 65 million years ago and caused the extinction of dinosaurs. This was based on the discovery of iridium in several locations all at the same geologic level consistent with that time. Iridium comes mostly from asteroids. Based on the amount of iridium found, they estimated something 6-14 km in diameter hit somewhere on Earth.

In the 1940s and later, Petróleos Mexicanos (PEMEX) was drilling for oil in the Yucatan peninsula of Mexico near the village of Chicxulub. In 1978, its geophysicists noticed a 180-km-wide circular anomaly of their magnetic and gravity data there. The cause was unknown. The simply felt there was something enormous and circular underground that has different physical properties from the surrounding crust. 

In 1988, archaeologist/geologist Kevin Pope was at a scientific conference talking about cenotes (freshwater sinkholes) in Yucatan, where he and NASA researcher Charles Duller were working on a project on surface water and Mayan archaeology. Cenotes were all over the peninsula, but Adriana asked him about a curious ring of cenotes Pope and Duller had found there to the west of many other scattered cenotes. She wondered if the ring might be evidence of an asteroid crater, so they set out on an expedition to investigate.
Adriana (center with hat) with part of the Chicxulub expedition
(image spliced from The Planetary Report, 1995)

The cenotes weren't formed directly by the asteroid. They formed naturally in the underground limestone, but the asteroid impact has weakened the ring area on the crater's edge. Together, they used this data and the PEMEX data to confirm it in 1991 and 1993.

Left: Location of Yucatan and Chicxulub crater
Right: Gravity map superimposed on sinkholes

During her full-time work at JPL as she studied for her master's degree, she investigated not only the surface of Mars, but its surroundings. In 1984, using Viking Orbiter data, she coauthored a pictorial description of Mars' moon Phobos ("Phobos: Close encounter imaging from the Viking Orbiters"). She also coauthored a paper "Mars: Satellite and Ring Search from Viking" in 1988. (No rings or additional moons were found.)

Model of Viking lander with Carl Sagan, and first color image from Mars.

In addition to studying the data from the Viking landers, she was also involved in the Galileo mission to Jupiter. She joined the team in 1984. The robotic probe launched in 1989 and reached Jupiter in 1995 for orbital analysis of the planet and its moons. The Galileo used Near Infrared Mapping Spectrometry (NIMS) to analyze layers of Jupiter's clouds at different wavelengths. Different gases and clouds absorb specific infrared colors, so by looking at which colors are missing or strong, scientists identify gases like methane, ammonia, and water vapor. 

Jupiter (Wikipedia) and the NIMS analysis of its red spot (NASA, 1996)
Top wavelength: red spot showing features what eyes can barely see
2nd wavelength: ammonia ice, with red to yellow are, blue where none exists
3rd wavelength: cloud heights, with the highest clouds in red (10-20 km higher than others)
Bottom wavelength: shows the lower surrounding clouds.

The NIMS system was also used on a project to study Venus, with Ocampa's assistance.
NIMS image of Venus (Vision Learning)

Her job as science coordinator, Ocampo scheduled the observations of Jupiter's moon Europa, and led the data analysis in 2005 after Galileo was allowed to end its mission in 2003 by entering Jupiter's atmosphere. 

She got her master's in 1997 rather than sooner because she was spending so much time working at JPL. But during that time, she was recognized for her efforts. For example, she received the Woman of the Year Award in Science in 1992. 

In 2006, she began working as the head of the Juno mission, NASA's second probe to Jupiter and the first one using solar panels for power. Its goal (still ongoing since its arrival in 2016) is to "understand the origin and evolution of Jupiter". 

During all of this time, she kept up her research into the Chicxulub crater and published extensively. With her international connections, she decided to pursue a doctoral degree in planetary geology at the Vrije Universiteit Amsterdam, The Netherlands, where she studied "ejecta layers"—shattered rock and debris thrown hundreds of miles wide by the asteroid impact—from the Chicxulub crater. In particular, she investigated tiny green glass spheres called tektites—rocks that were melted by the heat of the impact. She started her PhD around 2009 and completed it in 2012-2013.

Microtektites from Chicxulub, about 1 mm diameter (from EurekAlert, AAAS)

At NASA she served as the lead program executive for New Frontiers, which included the Juno mission to Jupiter, the New Horizons mission to Pluto, and the asteroid (Bennu) sample return mission OSIRIS-REx. When New Horizons flew past Pluto, it collected data on Arrokoth, the 36 km (22 miles) long dumbbell-shaped asteroid, the most distant and most primitive object ever explored by a spacecraft. Adriana was one of 133 coauthors on a paper about it. Ocampo retired from NASA in 2023. 

Artist rendition of Arrokoth with the New Horizons spacecraft (Universe Magazine)

Shortly after gettingi her PhD, Adriana won the 2016 National Hispanic Scientist of the Year award.
Receiving the award, October 23

She has also received many other honors, such as contributions to the 2001 ClusterII mission to study the Earth's magnetosphere (still ongoing), Woman of the Year Award in Science in 1992, Colombian Orquidea Award in science (2003), and the JPL Advisory Council for Women Award in 1996. She was also featured at the educational series Women in Science in the module “Space Geologist”.

Aside from administrative duties at NASA and her planetary geology research, Adriana has also helped spread science to the world. With sponsorship from The Planetary Society (TPS), she organized a program to bring planetary science to developing countries beginning in 1987, and reaching Mexico, Costa Rica, Columbia, Nigeria, Egypt, Argentina and China through 2003. TPS, the United Nations, and the European Space Agency sponsored additional workshops in some of those countries. Ocampo worked with the United Nations to develop these workshops, and she also founded the Pan American Space Conference to promote international communication and cooperation in space science and technology. She promotes STEM learning  by speaking at functions for young people, mentoring girls and women with dreams of science careers, and volunteering at medical camps. To no surprise, her emphasis has been on young women, and Latinas in particular, who are future scientists and engineers. 

Her office at NASA


Sunday, July 19, 2026

Some people use echolocation to get around

Link to article


Blind people cannot see, but that comes in varying degrees. Only about 18% of people who are legally blind see nothing at all, only darkness. To get around, most use a cane pointed and waved in front of them to detect objects, steps, and holes. Only about 2-5% of blind people have guide dogs, mostly because of their cost (food, veterinary care, and supplies), need to care for the dog, and lack of actual need to move around.

Various technologies exist to help blind (or sight-impaired, if you wish to be accurate) people to navigate in their daily lives. They can range from tens to thousands of dollars.

  • Smartphone apps like BlindSquare cost $40-60.
  • A new strap around your arm called the WayBand costs $179.
  • Handheld or wearable computer devices like StellarTrek, Glidance, and the Biped Vest can run from $1,000 to $1,500 to $2,000-3,000, respectively.
  • Smart glasses and visors are the most expensive at $4,000 for  OrCam MyEye Pro and $7,000 for eSight 4.
Some blind people rely on echoes from taps of their cane or stomping feet to get a relative position of objects. But other than the standard white cane, some people rely on themselves using sound that they make with their mouths in a process called echolocation. Basically, like a bat or dolphin, echolocation involves sending out a clicking sound and interpreting the echo it makes. It helps judge size, position, shape, and even texture of objects in front or to the sides.

Here is a video showing Daniel Kish (President of the World Access for the Blind) demonstrating this and explaining aspects of human echolocation.

From YouTube

The first report of blind people with higher level abilities in hearing was published in 1749 by Denis Diderot, who was a philosopher, art critic, and writer. He also co-created a general encyclopedia in France in 1751. Some of his writing was on science topics, and he compiled them in a collection called Memoires sur differents sujets de mathematique (1748). In it, he wrote about mathematics, physics, and natural philosophy, and he was very interested in acoustics, the branch of physics that studies sound. Some of his essays in the 1748 work dealt with original ideas on acoustics, tension, and air resistance. He had a blind friend who could sense objects in front of him as well as the distance from him. Diderot thought this was due to what he called "facial vision" or "obstacle sense", caused by increased sensitivity of the facial nerves and end-organs to pressure on the face.

Denis Diderot (Wikipedia)

From 1808 to 1874, various researchers experimented with blind people and came up with many ideas about how they could tell objects were near. An Austrian psychologist Theodor Heller concluded from his tests that his subjects could perceive objects by sound at about 3-4 meters and by air pressure on the forehead at about 60-70 cm. 

Researchers at the Smith-Kettlewell Eye Research Institute in San Francisco recently conducted a study to learn more about how this works. They worked with 4 male blind people who were already experts in practicing echolocation, and with 21 people who could see (12 male, 9 female) and were not trained in echolocation.

They were placed in a dark booth and wore a special cap with 64 sensors to detect their brain activity. They also wore earphones to hear computer-generated fake clicks like the human mouth would make from experts in echolocation. 

A type of sensor cap like the one used in the study (BioSemi)

The first simulated click was fed into their earphones as if they had made the sound themselves and projected it in front of them. A second click was computer generated to sound like it had reflected off something at different angles (5°, 10°, 15°, 20°, or 25°) to their left or right. The clicks were produced in different numbers, a set of 2 clicks, or 5, 8, or 11.

Top view showing the left/right angles of simulated clicks (Garcia-Lazaro & Teng, 2026)

It should be no surprise to learn that the expert echolocators in this study performed better. From the brain activity sensors, the researchers determined that because of their experience in the past, their brains could process the clicks better than brains of sighted people doing this for the first time. Their processing was more sophisticated:
  • they put together multiple clicks into a direction 
  • sighted people took each click/echo separately to make individual judgments of the location
People who use echolocation can also judge the size of objects, and sighted people can learn to tell the difference. California researchers Teng and Whitney set up 2 circular plates of different sizes in front of people in a dark room. The larger plate was sometimes on top, sometimes on the bottom. The angle of the top disk (θ) was also changed from 4º to 37º by raising the top disk. The test subjects made clicks with their mouths and reported on the location of the larger disk.

Setup: left shows what the test subjects faced in the dark, right shows a side view (Teng & Whitney, 2011)

These sighted people began to learn how to judge the location in 1-2 hours of testing, and by 3-6 hours they had reached their maximum ability. Some of them were almost the same ability as expert blind people who had experience using echolocation.

In another test, the 2 disks were the same size, and the object was to tell whether the top disk was to the left or right. That left-right angle from the test subject's head varied from 1.1°, 2.2°, 4.4°, 6.6°, and 13.2°. This was more difficult, and the average score was 63.5% correct even at the largest left-right angle of 13.2°. But some people were 95% correct at that angle. Two out of 11 people were able to judge as small an angle as 4.1° and 6.7°.
Diagram of setup to determine left-right position (from Smith-Kettlewell Eye Research Institute)

In 2021, researchers tested sighted volunteers against blind echolocation experts and novices. They faced a rectangular plate which was rotated to 4 positions. So, they could get 25% correct just by random guessing. The idea was to see how well they could judge the "shape" (by a different angle).

Setup for the rectangular plate experiment (Norman et al., 2021)

Sighted people and blind novices were trained in echolocation 2-3 hours a day, twice a week, for 10 weeks. The rate of learning of sighted and blind novices was the same, and their accuracy was also not different statistically. They got 38% to 69% correct from training period 1 to 20. If you separate the data, the sighted subjects got 76% by session 20, while the blind novices scored an average of 62%. By week 10, both novice groups were as good as the expert blind echolocators who were being tested at a further distance!

Researchers in the UK created virtual mazes for people to navigate in 2020. First, they made a real maze in different configurations but on a smaller scale than for people. Next, they put a mannequin head at different places and angles inside the mazes and generated a click from its mouth. That sound was recorded and used in the virtual maze when people heard the sounds on their earphones. Third, the participants listened to the sounds and imagined they were in a maze; they then used a keyboard to "move" themselves through the mazes based on the different sounds they heard. The final target sound had a different sound than the rest of the maze, so they knew when they had reached the end.

Three configurations of virtual mazes. Each square represents a computer key move
(modified from Dodsworth et al., 2020)

This study was done in 2020 using blindfolded sighted people, and in 2021 using blindfolded sighted people, blind novices, and expert blind echolocators. In 2020, the test subjects learned how to use the virtual echolocation to navigate through the mazes faster and with fewer "virtual collisions" with the "virtual walls" of the mazes. They had a 98% success rate after 14 training sessions. And, after 19 and 20 sessions, they were given mirror images of the mazes and succeeded at a similar rate.

In the 2021 study, blind and sighted novices became as good as expert echolocators after 14 sessions, and the sighted people ran the mazes faster than the experts (40.87 seconds, compared with 67.49 seconds). Some say that's because they weren't as afraid to bump into walls, even virtual ones, as the real blind people.

When people perform echolocation, what is being activated in the brain? Obviously, they hear the echoes of clicks, but many factors are involved in processing the information. It could be direction, size, even texture of what they hear. Mapping the brain can be done to see where it is active during different stimuli. This image shows generally where certain feelings are sensed. Vision is interpreted in the rear of the brain, while hearing is interpreted on the left and right sides. In the lower picture, you can see that there is some crossover (purple area) between the two senses.



A group of scientists compared 2 blind patients with sighted controls. They first allowed them to hear environmental noises (like wind, leaves rustling on trees) when the blind people made echolocation sounds. Both could detect objects, but the one that had been blind since 13 months old had more brain activity than one who had been blind since 14 years old. A sighted control showed no activity when they tried to identify objects that the blind people were echolocating.

When they removed all background noise and let them hear only the echolocation clicks and echoes, the blind people's brain activity was focused almost completely on the visual part of the brain as they tried to determine what the objects were. Controls again showed nothing.

Images from Thaler et al. 2011

So, anyone can learn to echolocate, and science is learning more about how it works. Here is another video with Daniel Kish not only explaining more about his use of echolocation, but demonstrating how it allows him to ride a bicycle and even travel.

Video from YouTube

Sunday, June 7, 2026

Whale pee is an ocean bounty 

Most people would easily agree that peeing in a swimming pool is unsanitary. But people think nothing of swimming in lakes, rivers, and oceans, where many animal species do that (and more). Pee (urine) is a bodily waste product, something the body doesn't need anymore and that can cause problems if retained. But it can also be useful in environmental settings.

Whales are the largest animal creature in the seas and world. The fin whale, second largest in the world at 18–27 m (60–90 ft) long, can put 946 liters (250 gallons) of pee into the ocean in a single day. The third largest whale, the sei whale (19.5 m or 64 ft long) excretes 522 liters (138 gallons) per day. 

A fin whale and comparison to a human in size (Wikipedia)

A sei whale compared to human (Azores whale watching)

The ocean is far larger than any swimming pool, so you might think even this much urine is still a drop in the bucket. You'd be correct. Estimates put the population of sei whales at 50,000-80,000, and fin whales comprise about 100,000-119,000. Compare that volumetric contribution of urine to the 321 million cubic miles of ocean water.

Researchers from the UK and US have learned that gray, humpback, and right whales do not eat or defecate during their breeding season, but they still urinate. For example, in summer humpback whales feed along the shores of the Alaskan coast, but in winter they travel to warmer waters near Hawaii to breed. They have accumulated thick layers of fat (blubber) in summer, and as it is digested in the winter breeding season, the blubber is broken down into urine. A key chemical component of urine is the nitrogen-rich urea.

Location of humpbacks during feeding and breeding seasons (Science News Explores)

Professor Joe Roman (University of Vermont) and his colleagues from Arizona, California, Florida, New Jersey, the UK, Brazil, and Denmark published a study in March 2025 regarding how baleen whales transport nutrients from their feeding grounds to tropical and subtropical ecosystems where they breed. Ocean creatures like zooplankton float in the waters as the currents take them wherever they drift.
Types of zooplankton (Wikipedia):
copepods (1–5), gastropod larva (6) doliolids (7), fish eggs (8), and decapod larva (9)

Their wastes and dead bodies fall slowly from all levels of the ocean to the seafloor in what is called marine snow.
From YouTube

But whales feed mostly on the bottom, so the nutrients there get recycled only when whales come to the surface to pee or poop. It may have something to do with the different pressure and temperature causing the body to release its waste. This process of bringing such elements to the surface is called the whale pump. 
 
The whale pump distribution of ocean bottom nutrients (Roman and McCarthy, 2010; Roman et al., 2014)

So, the nitrogen and phosphorus in whale wastes mix with the upper ocean layers and serve to feed zooplankton and other organisms. Roman and his colleagues studied baleen whales (gray, blue, humpback, and fin whales) to see how much they contribute to the ecosystem from their wastes, rotting carcasses, and ejected placenta. As mentioned earlier, they found that one fin whale alone can excrete 1,136 liters (250 gallons) of urine per day. “In a place like Hawaii, the whales are bringing in more nitrogen than is being transported by wind and currents,” Roman said. From urine, feces, rotting bodies, and placenta, those whales dump 3,784 tons of nitrogen and 46,512 tons of organic matter into their breeding grounds, and most of the nitrogen in it comes from the urine.

Humpback whale peeing (from YouTube)

Getting back to urea, the major component of urine,  it looks like this chemically. It has 2 ammonia groups attached to carbon and oxygen. 

While zooplankton are the animal portion of plankton, phytoplankton represent the microscopic plant portion. These absorb urea in ocean waters and break it down into ammonia and carbon dioxide, which are building blocks of amino acids and proteins. As phytoplankton and zooplankton feed and grow, they circulate in the ocean as marine snow, as well as serve as food sources for other sea creatures. So, whale urine fertilizes the ocean. And the blue-green algae component of phytoplankton is also important in absorbing carbon dioxide from the atmosphere, an element of climate change balance.

Phosphate ions are also in urine, and in greater amounts in feces, and the phosphorus in those ions are needed by the local plankton to make DNA, RNA, phospholipids in cell membranes, and ATP (an energy source for cells).  Here are examples of just how much of each is excreted relatively in whale feces, as well as other macronutrients.

Whales do not find food and breeding grounds in the same places in the world, which is a good thing for spreading around their pee nutrients. Here is a map of just 3 species showing where they live.

Figure adapted from Roman et al., 2025

A 2015 study by Professor Christopher Doughty and his team (including Joe Roman) from various countries investigated the contribution of body wastes by whales and other animals over time. With regard to whales, they found that since whaling became an industry, the "whale pump" effects have dropped by about 70%, so fewer nutrients are now spread in the oceans.

Whale urine is not the only source of nitrogen for phytoplankton and zooplankton. Bacteria, physical mixing of sea bottom, decomposing sea life, and runoff of fertilizers from the land also add it to the oceans. But whales do contribute as "ecosystem engineers", even if it is only locally. Some scientists refer to their spreading of nutrients across the planet as a member of the circulatory system for the world.

Sunday, April 26, 2026

Scientists find hidden world under one of the oldest trees

Link to article here

What do you expect to find under a tree? One obvious answer is roots, or a root system. Another would be soil. But what grows in that soil separately from the tree's roots? Insects? Worms? Fungi? Bacteria? Scientists in Chile have studied a particularly long-lived tree and found some interesting answers.

The Gran Abuelo ("great-grandfather") alerce in Chile (The Guardian).

The alerce (pronounced ah-LAIR-seh) is one of the oldest living plants on Earth. Known also as Patagonian cypress or its genus name Fitzroya, alerce trees are native to the Andes mountains of Chile and Argentina and to southern Chile. The largest is named Gran Abuelo or Alerce Milenia, >60 m (200 ft) tall, with a trunk diameter of 4.26 m (14.2 ft). Its tree rings have been counted to 3,622, which marks is currently accepted age, but Jonathan Barichivich thinks it may be 5,484 years old. Average sizes for alerce measure 40–60 m (130–200 ft) high, occasionally more than 70 m (230 ft), and up to 5 m (16 ft) in trunk diameter. Some alerce have been around for over 3,600 years, Compare this to the sequoia giant redwoods of California, which are 50–85 m (164–279 ft) high with trunk diameters ranging from 6 to 8 m (20–26 ft). The oldest one known is 3,200–3,266 years old.

Sequoia (left, worktolive.info) vs alerce (Fitzroya) (right, Wikipedia)

But age alone is not what makes the alerce trees interesting. A Dover, Delaware group of scientists recently took samples of the soil under several alerce to see what they could find. They belong to the charity group SPUN (Society for the Protection of Underground Networks). Its mission is to map certain "fungal communities and advocate for their protection". The special fungi are called mycorrhizal fungi.

These fungi produce tangled interconnected networks underground where they form symbiotic relationships with plants. That means the plants are dependent on them, and they are dependent on the plants.

Mycorrhizal fungi (right) living in soil and infiltrating roots (Hokkaido University)

Mycorrhizal fungi mixed in with roots (Ohio State University)

Four major groups of soil fungus can be found in the world: Zygomycota (<1,000 species, common bread molds), Ascomycota (30,000 species mostly yeasts used in baking), Basidiomycota (most mushrooms, toadstools, and puffballs, 40,000-52,000 species), and Deuteromycota (17,000–25,000, including the mycorrhizal fungi).

Most soil fungi serve an important ecological role: to decompose lignin and organic matter in soil. Lignin is the complex polymer found in cell walls of plants, about 30% of organic carbon on Earth. Only cellulose is more common. Lignin is in dead fallen trees and leaves that have died.

Leaf litter decomposition (Mycosphere)

Why is any of that important to trees?

The decomposed material is food for trees (and other life). Fungi living under trees attach themselves to roots. Not only do they supply nutrients from soil to the trees, but the trees give them nourishment like sugars that the tree cells make. It is said that 80-90% of all plants form symbiotic fungal relationships like this.

The SPUN team took soil samples from 3 locations near each tree, and then from 4 additional locations about 5 meters away from it. These inner samples 10 cm (~4 inches) deep were pooled, as were the outer ones. 

Soil probe/auger and mixing bucket (left); 
tip of auger showing how deep the sample was (Extension University of Missouri)

Dark circles show the samples near the tree trunk, as seen from above.
Triangles show the soil sample locations further away. (Biodiversity and Conservation article)

Pooled samples were then added to a special liquid solution containing ceramic or zirconia beads 0.1 mm to 0.7 mm diameter (like fine sand or the width of a human hair). These were then shaken vigorously so the beads would smash into the soil and any fungi in it. These impacts would then break open the fungal cells and release their DNA, which could be separated from the mixture and analyzed.

Diagram showing how beads (blue) would crash into fungal cells (large red) 
to release their contents (small red) (adapted from Molecular Biotechnology, 2023)

The researchers found 300 species of fungi under the oldest tree, not under any others that they sampled, and it was twice as many as any of the samples under other trees. That means even the younger trees still had about 150 species of fungi, but over time the older trees had developed a richer, more diverse community underground.

There are two types of mycorrhyzal fungi: the AM type which grow into the plant root cells, and the ECM type which only grow between root cells. Two different DNA databases had to be used to learn which fungi of these two types were in the samples. The MaarjAM database had DNA information for the AM mycorrhyzal fungi, and the UNITE database had DNA information for ECM mycorrhyzal fungi. The left bar graph below shows as trees age, the number of colors (different species of AM fungi) doesn't increase, but one type (brown bar species) does. On the other hand, for the right bar graph, the number of colors (number of ECM fungi species) increases as trees age. In each case, one type of fungus (represented by a pink or light green bar) is present more than others.

Graphs adapted from original article (Biodiversity and Conservation, 2023)

Basically, the diversity of the ECM mycorrhyzal fungi increases as trees age. So, larger trees somehow provide a better environment for more species of those fungi, and if they are cut down, that environment is lost and will take hundreds of years to recover.

The number and diversity of such fungi may change the entire soil ecosystem as follows:

  • they suppress plant root diseases
  • they also promote healthier plants by attacking plant pathogens with fungal enzymes
  • they produce many vitamins which promote plant growth
  • they can penetrate soil better than roots to reach trapped water and help trees in dry seasons

So, a more diverse ecosystem of fungi makes for stronger forests.

Here is a simple video (1 minute) explaining the dynamic relationship between mycorrhyzal fungi and tree root systems. https://www.youtube.com/watch?v=v88gbtKBTv4&t=68s 

From YouTube